Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2997989 chr13:114152265 T/C 4.5E-12 177 24.17 29.57 3.32 KM Plot
PCPG rs2997997 chr13:114163702 T/C 6.32E-12 176 24.1 29.57 3.32 KM Plot
PCPG rs3008218 chr1:26375577 A/G 1.89E-5 178 25.17 25.63 25.53 KM Plot
PCPG rs3021514 chr8:11302044 G/T 8.89E-6 177 25.53 21.1 14.15 KM Plot
PCPG rs3049877 chr3:80692353 C/CAT 0.000182 176 19.53 24.5 27.2 KM Plot
PCPG rs3066970 chr1:106638335 TAA/T 0.000289 171 25.28 25.9 3.17 KM Plot
PCPG rs3079523 chr2:107255079 GAA/G 0.000336 172 26.57 21.95 25.87 KM Plot
PCPG rs3097417 chr3:53088601 C/G 7.29E-6 174 11.78 19.72 25.77 KM Plot
PCPG rs3103589 chr5:171532333 T/C 3.37E-6 175 25.87 22.3 17.12 KM Plot
PCPG rs3103590 chr5:171532277 C/T 4.55E-5 178 25.87 19.2 17.12 KM Plot
PCPG rs3103591 chr5:171532229 G/A 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs3103592 chr5:171531992 A/G 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs3103594 chr5:171531899 G/A 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs3111484 chr5:171532397 C/T 4.55E-5 178 25.87 19.2 17.12 KM Plot
PCPG rs3111485 chr5:171532373 A/G 4.55E-5 178 17.12 19.2 25.87 KM Plot